Features in Genes Pre-Computes

Because of the complexity of the query, identifying some features contained within genes can be time consuming. Therefore, we have precomputed lists of genes that contain various features using a number of different criteria and made those lists available here. Since different applications might want different criteria for the selections, there are several different criteria sets available. More straightforward schema structures that allow for these types of queries to be performed in real time are currently being tested. These limited capabilities are possible within the GRID system (one chromosome at a time etc) and can be reached from the GRID database web pages under the pupy, str and segdups categories.

These data were derived by analysis of various types of ABCC-generated features and the refFlat gene set. The description of the feature set and the genes identified along with the omim information for those genes are listed in these files.

GET     File column definitions and content

GET     PuPY patterns in Genes

GET     MonoNucleotide PuPY patterns in Genes

GET     STR patterns in Genes